Plot a Metabolite object including boxplot (more to add.).
Usage
plot_Metabolite(
object,
plot = "boxplot",
x = "NEG",
feature_name = NULL,
color = "NEG",
shape = "NEG",
fill = "NEG",
random_select = 16,
size = 0.6,
n_row = 1,
n_col = 1,
ylab = "featureID",
height = 10,
width = 10,
save_to_file = NULL
)Arguments
- object
A Metabolite object.
- plot
type of plot, current support `boxplot` and `betweenstats`.
- x
The x-axis coordinate.
- feature_name
A vector of selected metabolites to plot. If NULL, will randomly select 16 (default) metabolites to plot.
- color
A column in `@sampleData` to show the color of points.
- shape
A column in `@sampleData` to show the shape of points.
- fill
A column in `@sampleData` to show the `fill` for histogram.
- random_select
An integer, number of randomly selected metabolites to plot.
- size
Point size.
- n_row
Number of rows of subfigures for `betweenstats`
- n_col
Number of columns of subfigures for `betweenstats`
- ylab
Column name to annotate the y-axis in `betweenstats` (eg. "BIOCHEMICAL"), default column: "featureID".
- height
Height of the figure.
- width
Width of the figure.
- save_to_file
Path to save the figure.